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Sequence alignment
Results: 764

#	Item
451	Protein Engineering vol.12 no.7 pp.527–534, 1999 Comparing protein sequence-based and predicted secondary structure-based methods for identification of remote homologs V.Geetha1,2, Valentina Di Francesco3, Jean Garni Add to Reading List Source URL: mscl.cit.nih.gov Language: English Sequence alignment Threading Protein structure prediction BLAST Sequence motif HMMER Protein domain CASP Protein structure Bioinformatics Science Biology
452	Song et al. BMC Bioinformatics 2011, 12(Suppl 1):S45 http://www.biomedcentral.com[removed]S1/S45 RESEARCH Open Access Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2011-10-04 14:29:13 Computational phylogenetics Genetics Molecular genetics DNA Homology Gene duplication Sequence alignment Molecular evolution UCSC Genome Browser Biology Bioinformatics Science
453	Downloaded from www.genome.org on June 14, 2007 Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data David C. King, James Taylor, Ying Zhang, Yong Cheng, Heather A. Lawson, Joel Mart Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2007-06-14 10:57:01 DNA Bioinformatics Genomics Noncoding DNA Human genome Gene Promoter UCSC Genome Browser Sequence alignment Biology Genetics Gene expression
454	BIOINFORMATICS ORIGINAL PAPER Structural bioinformatics Add to Reading List Source URL: www-bcf.usc.edu Language: English - Date: 2011-08-01 12:49:02 Biochemistry Protein structure Biomolecules Protein methods Catalysis Protein secondary structure Catalytic triad Protein structure prediction Sequence alignment Chemistry Biology Bioinformatics
455	Amino Acid Substitution Scores Consider the problem of scoring a region of an amino-acid alignment that contains no gaps, such as: GSAQVKGH GNPKVKAH Here we discuss standard ways of assigning a score to each amino acid p Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2002-10-31 14:08:53 Biology Matrices Genetics BLOSUM Point accepted mutation BLAST Substitution matrix Matrix Sequence alignment Bioinformatics Science Computational phylogenetics
456	Notes on Dynamic-Programming Sequence Alignment Introduction. Following its introduction by Needleman and Wunsch (1970), dynamic programming has become the method of choice for ‘‘rigorous’’ alignment of DNA and p Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2002-10-24 13:25:13 Smith–Waterman algorithm Sequence alignment BLAST Dynamic programming Needleman–Wunsch algorithm Structural alignment Computational phylogenetics Bioinformatics Science
457	Multiple Sequence Alignments Introduction The Questions Add to Reading List Source URL: www.tcoffee.org Language: English - Date: 2009-10-25 19:29:47 Biotechnology Sequence alignment Multiple sequence alignment Substitution matrix Threading BLOSUM PROSITE Bioinformatics Science Biostatistics
458	Define “Alignment” An alignment of two sequences (frequently called a local alignment) can be obtained as follows. 1. extract a segment from each sequence 2. add dashes (gap symbols) to each segment to create equal-l Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2001-08-31 14:54:22 Dynamic programming Computational science Smith–Waterman algorithm Matrices Sequence alignment Needleman–Wunsch algorithm Computational phylogenetics Bioinformatics Science
459	Downloaded from www.genome.org on June 14, 2007 Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome Elliott H. Margulies, Gregory M. Cooper, George Asimenos, Daryl J. Tho Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2007-06-14 10:54:57 Computational phylogenetics Genetics Genomics Biological databases Sequence alignment Genome project UCSC Genome Browser BLAST Human genome Biology Science Bioinformatics
460	Chicken Special/Resource Mulan: Multiple-sequence local alignment and visualization for studying function and evolution Ivan Ovcharenko,1,6 Gabriela G. Loots,2 Belinda M. Giardine,3 Minmei Hou,4 Jian Ma,4 Ross C. Hardis Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2004-12-09 09:15:42 Computational phylogenetics DNA Biological databases Genomics Sequence alignment UCSC Genome Browser VISTA Multiple sequence alignment BLAST Bioinformatics Science Biology

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